Publications by Year: 2011

Carpenter AE. 2011. “Extracting biomedically important information from large, automated imaging experiments.” In ISBI 2011 (Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro), 1723-1726. Publisher's Version
Lindquist RA, Ottina KA, Wheeler DB, Hsu PP, Thoreen CC, Guertin DA, Siraj MA, Senguptal S, Shaul YD, Lamprecht MR, Madden KL, Papallo AR, Jones T, Sabatini DM, and Carpenter AE. 2011. “Genome-scale RNAi on living-cell microarrays identifies novel regulators of Drosophila melanogaster TORC1 - S6K pathway signaling.” Genome Research 2011, 21:433-446. Publisher's Version
Elkabets M, Gifford AM, Scheel C, Nilsson B, Reinhardt F, Bray MA, Carpenter AE, Jirström K, Magnusson K, Ebert BL, Pontén F, Weinberg RA, and McAllister SS. 2011. “Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice.” Journal of Clinical Investigation 121(2): 784-99. Publisher's Version
Kamentsky L, Jones TR, Fraser A, Bray M, Logan D, Madden K, Ljosa V, Rueden C, Harris GB, Eliceiri K, and Carpenter AE. 2011. “Improved structure, function, and compatibility for CellProfiler: modular high-throughput image analysis software.” Bioinformatics 2011. Publisher's Version
Peterson TR, Sengupta SS, Harris TE, Carmack AE, Balderas E, Guertin DA, Madden KL, Carpenter AE, Finck BN, and Sabatini DM. 2011. “mTOR complex 1 regulates lipin 1 localization to control the SREBP pathway.” Cell 146(3):408-420. Publisher's Version
Pretorius AJ, Bray M-A, Carpenter AE, and Ruddle R. 2011. “Visualization of parameter space for image analysis.” In InfoVis 2011 (Proceedings of the 2011 IEEE Symposium on Information Visualization), 2402-11. Publisher's Version