Publications by Year: 2012

Unadkat HV, Hulsman M, Cornelissen K, Papenburg BJ, Truckenmüller RK, Carpenter AE, Wessling M, Post GF, Uetz M, Reinders MJT, Stamatialis D, Blitterswijk van CA, and Boer de J. 2012. “An algorithm-based topographical biomaterials library to instruct cell fate.” PNAS 108(40):16565. Publisher's Version
Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurmann N, Swedlow JR, Tomancak P, and Carpenter AE. 2012. “Biological imaging software tools.” Nature Methods 9(7):697-710. Publisher's Version
Carpenter AE, Kamentsky L, and Eliceiri KW. 2012. “A call for bioimaging software usability.” Nature Methods 9(7):666-70. Publisher's Version
Kitami T, Logan DJ, Negri J, Hasaka T, Tolliday NJ, Carpenter AE, Spiegelman BM, and Mootha VK. 2012. “A chemical screen probing the relationship between mitochondrial content and cell size.” PLoS ONE 7(3):e33755. Publisher's Version
Wählby C, Kamentsky L, Liu ZH, Riklin-Raviv T, Conery AL, O'Rourke EJ, Sokolnicki KL, Visvikis O, Ljosa V, Irazoqui JE, Golland P, Ruvkun G, Ausubel FM, and Carpenter AE. 2012. “An image analysis toolbox for high-throughput C. elegans assays.” Nature Methods 9(7):714-716. Publisher's Version
Bray, M-A, Fraser AN, Hasaka TP, and Carpenter AE. 2012. “Workflow and metrics for image quality control in large-scale high-content screens.” Journal of Biomolecular Screening 17(2):135-143. Publisher's Version
Bray MA and Carpenter AE. 2012. “Advanced Assay Development Guidelines for Image-Based High Content Screening and Analysis.” In: Sittampalam GS et al., eds. Assay Guidance Manual. .
Ljosa V, Sokolnicki KL, and Carpenter AE. 2012. “Annotated high-throughput microscopy image sets for validation.” Nature Methods 9(7):637. Publisher's Version
Wen Q, Goldenson B, Silver SJ, Schenone M, Dancik V, Huang Z, Wang LZ, Lewis TA, An WF, Li X, Bray MA, Thiollier C, Diebold L, Gilles L, Vokes MS, Moore CB, Bliss-Moreau M, Verplank L, Tolliday NJ, Mishra R, Vemula S, Shi J, Wei L, Kapur R, Lopez CK, Gerby B, Ballerini P, Pflumio F, Gilliland DG, Goldberg L, Birger Y, Izraeli S, Gamis AS, Smith FO, Woods WG, Taub J, Scherer CA, Bradner JE, Goh BC, Mercher T, Carpenter AE, Gould RJ, Clemons PA, Carr SA, Root DE, Schreiber SL, Stern AM, and Crispino JD. 2012. “Identification of Regulators of Polyploidization Presents Therapeutic Targets for Treatment of AMKL.” Cell 150(3):575-89. Publisher's Version