Publications by Year: 2014

Nieland TJF, Logan DJ, Saulnier J, Lam D, Johnson C, Root DE, Carpenter AE, and Sabatini BL. 2014. “High Content Image Analysis Identifies Novel Regulators of Synaptogenesis in a High-Throughput RNAi Screen of Primary Neurons.” PLoS ONE 9(3):e91744. Publisher's Version
Rees P, Wills JW, Brown MR, Tonkin J, Holton MD, Hondow N, Brown AP, Brydson R, Millar V, Carpenter AE, and Summers HD. 2014. “Nanoparticle vesicle encoding for imaging and tracking cell populations.” Nature Methods 11:1177-1181. Publisher's Version
Khan IA, Fraser A, Bray M-A, Smith PJ, White NS, Carpenter AE, and Errington RJ. 2014. “ProtocolNavigator: emulation based software for the design, documentation and reproduction biological experiments.” Bioinformatics 30(23):344--3442. Publisher's Version
Majithia AR, Flannick J, Shahinian P, Guo M, Bray MA, Fontanillas P, Gabriel SE, GoT2D Consortium, and NHGRI/FHS Allelic Spectrum Pr. 2014. “Rare variants in PPARG with decreased activity in adipocyte differentiation are associated with increased risk of type 2 diabetes.” PNAS 111(36):13127-13132 . Publisher's Version
Wawer MJ, Li K, Gustafsdottir SM, Ljosa V, Bodycombe NE, Marton MA, Sokolnicki KL, Bray M-A, Kemp MM, Winchester E, Taylor B, Grant GB, Hon CSY, Duvall JR, Wilson JA, Bittker JA, Dančík V, Narayan R, Subramanian A, Winckler W, Golub TR, Carpenter AE, Shamji AF, Schreiber SL, and Clemons PA. 2014. “Toward performance-diverse small-molecule libraries for cell-based phenotypic screening using multiplexed high-dimensional profiling.” PNAS. 111(30):10911-10916 . Publisher's Version
Chudnovsky Y, Kim D, Zheng S, Whyt WA, Bansal M, Bray MA, Gopal S, Theisen MA, Bilodeau S, Thiru P, Mitalipova M, Muffat J, Woolard K, Lee J, Nishimura R, Sakata N, Fine HA, Carpenter AE, Silver SJ, Verhaak RGW, Califano A, Young RA, Ligon KL, Mellinghoff IK, Root DE, Sabatini DM, Hahn WC, and Chheda MG. 2014. “ZFHX4 is a master regulator of NuRD core member CHD4 and regulates the glioblastoma tumor initiating cell state.” Cell Reports 6(2):313-324. Publisher's Version
Sheik-Khalil E, Bray M-A, Ozkaya S, Scarlatti G, Jansson M, Carpenter AE, and Fenyo EM. 2014. “Automated image-based assay for evaluation of HIV neutralization and cell-to-cell fusion inhibition.” BMC Infectious Diseases 14:472. Publisher's Version
Wählby C, Lee Conery A, Bray M-A, Kamentsky L, Larkins-Ford J, Sokolnicki KL, Veneskey M, Michaels K, Carpenter AE, and O'Rourke EJ. 2014. “High- and low-throughput scoring of fat mass and body fat distribution in C. elegans.” Methods 68(3):492-499. Publisher's Version
Stanley SA, Barczak AK, Silvis MR, Luo SS, Sogi K, Vokes M, Bray MA, Carpenter AE, Siddiqi N, Rubin EJ, and Hung DT. 2014. “Identification of host-targeted small molecules that restrict intracellular Mycobacterium tuberculosis growth.” PLoS Pathogens 10(2):e1003946. Publisher's Version
Du Z, Abedalthagafi M, Aizer AA, McHenry AR, Sun HH, Bray MA, Viramontes O, Machaidze R, Brastianos PK, Reardon DA, Dunn IF, Freeman GJ, Ligon KL, Carpenter AE, Alexander BM, Agar NY, Rodig SJ, Bradshaw EM, and Santagata S. 2014. “Increased expression of the immune modulatory molecule PD-L1 (CD274) in anaplastic meningioma.” Oncotarget 6(7):4704-16 . Publisher's Version
Singh S, Carpenter AE, and Genovesio A. 2014. “Increasing the content of high-content screening: an overview.” Journal of Biomolecular Screening 19(5):640-650. Publisher's Version
Singh S, Bray M-A, Jones TR, and Carpenter AE. 2014. “Pipeline for illumination correction of images for high-throughput microscopy.” Journal of Microscopy 256(3):231-236. Publisher's Version