Publications by Year: 2015

Logan DJ, Shan J, Bhatia SN, Carpenter AE. Quantifying co-cultured cell phenotypes in high-throughput using pixel-based classification. [Internet]. Methods pii: S1046-2023(15)30170-5 2015; Publisher's Version
Bray MA, Carpenter AE. CellProfiler Tracer: Exploring and Validating High-Throughput, Time-Lapse Microscopy Image Data [Internet]. BMC Bioinformatics 16:368 2015; Publisher's Version
Arbelle A, Drayman N, Bray M, Alon U, Carpenter AE, Riklin Raviv T. Analysis of High-throughput Microscopy Videos: Catching Up with Cell Dynamics [Internet]. Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015. 2015;:218–225. Publisher's Version
Singh S, Wu X, Ljosa V, Bray MA, Piccioni F, Root DE, Doench JG, Boehm JS, Carpenter AE. Morphological profiles of RNAI-induced gene knockdown are highly reproducible but dominated by seed effects. [Internet]. PLoS One 10(7): e(0131370) 2015; Publisher's Version
Bray MA, Vokes MS, Carpenter AE. Using CellProfiler for Automatic Identification and Measurement of Biological Objects in Images [Internet]. Current Protocols in Molecular Biology 2015;(109):14.17.1-14.17.13. Publisher's Version
Metelo AM, Noonan HR, Li X, Jin Y, Baker R, Kamentsky L, Zhang Y, van Rooijen E, Shin J, Carpenter AE, Yeh JR, Peterson RT, Iliopoulous O. Pharmacological HIF2α inhibition improves VHL disease-associated phenotypes in zebrafish model. [Internet]. Journal of Clinical Investigation. 125(5):1987-1997 2015; Publisher's Version
Gilad T, Bray MA, Carpenter AE, Riklin Raviv T. Symmetry-Based Mitosis Detection in Time-Lapse Microscopy. Paper presented at ISBI 2015 2015 International Symposium on Biomedical Imaging: From Nano to Macro. 2015;14:40-16.
Jeong YM, Duanting Z, Hennig H, Samanta A, Agrawalla BK, Bray MA, Carpenter AE, Chang YT. CDy6, a photostable probe for long-term real-time visualization of mitosis and proliferating cells. [Internet]. Chemistry and Biology.22(2):299-307 2015; Publisher's Version
Arganda-Carreras I, Turaga SC, Berger DR, Cireşan D, Giusti A, Gambardella LM, Schmidhuber J, Laptev D, Dwivedi S, Buhmann JM. Crowdsourcing the creation of image segmentation algorithms for connectomics. Frontiers in Neuroanatomy 9:00142 2015;