Publications by Year: 2017

Bray MA, Gustafsdottir SM, Ljosa V, Singh S, Sokolnicki KL, Bittker JA, Bodycombe NE, Dancík V, Hasaka TP, Hon CS, Kemp MM, Li K, Walpita D, Wawer MJ, Golub TR, Schreiber SL, Clemons PA, Shamji AF, and Carpenter AE. 2017. “A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Painting assay.” Gigascience. Publisher's Version
Vasilevich AS, Carlier A, Boer de J, and Singh S. 2017. “How Not To Drown in Data: A Guide for Biomaterial Engineers.” Trends in Biotechnology, 35(9):743-755. Publisher's Version
Hulshof FFB, Papenburg B, Vasilevich A, Hulsman M, Zhao Y, Levers M, Fekete N, Boer de M, Yuan H, Singh S, Beijer N, Bray MA, Logan DJ, Reinders M, Carpenter AE, Blitterswijk van C, Stamatialis D, and Boer de J. 2017. “Mining for osteogenic surface topographies: In silico design to in vivo osseo-integration.” Biomaterials 137:49-60. Publisher's Version
Hennig H, Rees P, Blasi T, Kamentsky L, Hung J, Dao D, Carpenter AE, and Carpenter AE. 2017. “An open-source solution for advanced imaging flow cytometry data analysis using machine learning.” Methods. pii: S1046-2023(16)30291-2. Publisher's Version
Barczak AK, Avraham R, Singh S, Luo SS, Zhang WR, Bray MA, Hinman AE, Thompson M, Nietupski RM, Golas A, Montgomery P, Fitzgerald M, Smith RS, White DW, Tischler AD, Carpenter AE, and Hung DT. 2017. “Systematic, multiparametric analysis of Mycobacterium tuberculosis intracellular infection offers insight into coordinated virulence.” PLoS Pathog. 15;13(5):e1006363. Publisher's Version
Doan M. 2017. “Zooming in on adipocytes: High and deep.” Cytometry A.;91(11):1051–1054. Publisher's Version
Hung J, Goodman A, Lopes S, Rangel G, Ravel D, Costa F, Duraisingh M, Marti M, and Carpenter AE. 2017. “Applying Faster R-CNN for Object Detection on Malaria Images.” In 2017 IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW)., Pp. 808–813. IEEE.
Caicedo JC, Cooper S, Heigwer F, Warchal S, Qiu P, Molnar C, Vasilevich AS, Barry JD, Bansal HS, Kraus O, Wawer M, Paavolainen L, Herrmann MD, Rohban M, Hung J, Hennig H, Concannon J, Smith I, Clemons PA, Singh S, Rees P, Horvath P, Linington RG, and Carpenter AE. 2017. “Data-analysis strategies for image-based cell profiling.” Nat Methods 14(9):849-863. Publisher's Version
Eulenberg P, Köhler N, Blasi T, Filby A, Carpenter AE, Rees P, Theis FJ, and Wolf FA. 2017. “Reconstructing cell cycle and disease progression using deep learning.” Nat Commun 8(1):463. Publisher's Version