Publications by Year: 2017

Hung J, Goodman A, Lopes S, Rangel G, Ravel D, Costa F, Duraisingh M, Marti M, Carpenter AE. Applying Faster R-CNN for Object Detection on Malaria Images. 2017 IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW). 2017;:808–813.
Eulenberg P, Köhler N, Blasi T, Filby A, Carpenter AE, Rees P, Theis FJ, Wolf FA. Reconstructing cell cycle and disease progression using deep learning [Internet]. Nat Commun 8(1):463 2017; Publisher's Version
Caicedo JC, Cooper S, Heigwer F, Warchal S, Qiu P, Molnar C, Vasilevich AS, Barry JD, Bansal HS, Kraus O, Wawer M, Paavolainen L, Herrmann MD, Rohban M, Hung J, Hennig H, Concannon J, Smith I, Clemons PA, Singh S, Rees P, Horvath P, Linington RG, Carpenter AE. Data-analysis strategies for image-based cell profiling [Internet]. Nat Methods 2017;14(9):849-863. Publisher's Version
Hulshof FFB, Papenburg B, Vasilevich A, Hulsman M, Zhao Y, Levers M, Fekete N, de Boer M, Yuan H, Singh S, Beijer N, Bray MA, Logan DJ, Reinders M, Carpenter AE, van Blitterswijk C, Stamatialis D, de Boer J. Mining for osteogenic surface topographies: In silico design to in vivo osseo-integration. [Internet]. Biomaterials 137:49-60 2017; Publisher's Version
Barczak AK, Avraham R, Singh S, Luo SS, Zhang WR, Bray MA, Hinman AE, Thompson M, Nietupski RM, Golas A, Montgomery P, Fitzgerald M, Smith RS, White DW, Tischler AD, Carpenter AE, Hung DT. Systematic, multiparametric analysis of Mycobacterium tuberculosis intracellular infection offers insight into coordinated virulence. [Internet]. PLoS Pathog. 15;13(5):e1006363 2017; Publisher's Version
Rohban MH, Singh S, Wu X, Berthet JB, Bray MA, Shrestha Y, Varelas X, Boehm JS, Carpenter AE. Systematic morphological profiling of human gene and allele function via Cell Painting [Internet]. eLife. 10.7554/eLife.24060 2017; Publisher's Version
Bray MA, Gustafsdottir SM, Ljosa V, Singh S, Sokolnicki KL, Bittker JA, Bodycombe NE, Dancík V, Hasaka TP, Hon CS, Kemp MM, Li K, Walpita D, Wawer MJ, Golub TR, Schreiber SL, Clemons PA, Shamji AF, Carpenter AE. A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Painting assay. [Internet]. Gigascience 2017; Publisher's Version PDF
Hennig H, Rees P, Blasi T, Kamentsky L, Hung J, Dao D, Carpenter AE. An open-source solution for advanced imaging flow cytometry data analysis using machine learning. [Internet]. Methods. pii: S1046-2023(16)30291-2 2017; Publisher's Version
Doan M. Zooming in on adipocytes: High and deep. [Internet]. Cytometry A.;91(11):1051–1054 2017; Publisher's Version
Vasilevich AS, Carlier A, de Boer J, Singh S. How Not To Drown in Data: A Guide for Biomaterial Engineers [Internet]. Trends in Biotechnology 2017;35(9):743-755. Publisher's Version