Publications by Year: 2019

Shlevkov E, Basu H, Bray MA, Sun Z, Wei W, Apaydin K, Karhohs KW, Chen PF, Smith JLM, Wiskow O, Roet K, Huang X, Eggan K, Carpenter AE, Kleiman RJ, Schwarz TL. A High-Content Screen Identifies TPP1 and Aurora B as Regulators of Axonal Mitochondrial Transport [Internet]. Cell Reports 2019;28(12):3224-3237.e5. Publisher's Version
Caicedo JC, Goodman A, Karhohs KW, Cimini BA, Ackerman J, Haghighi M, Heng C, Becker T, Doan M, McQuin C, Rohban M, Singh S, Carpenter AE. Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl [Internet]. Nature Methods 2019;16:1247–1253. Publisher's Version PDF
Lafarge MW, Caicedo JC, Carpenter AE, Pluim JPW, Singh S, Veta M. Capturing Single-Cell Phenotypic Variation via Unsupervised Representation Learning. [Internet]. Proceedings of Machine Learning Research 2019;102:315–325. Publisher's Version
Caicedo JC, Roth J, Goodman A, Becker T, Karhohs KW, Broisin M, Molnar C, McQuin C, Singh S, Theis F, Carpenter AE. Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images. Cytometry 2019;(95):952-965.
Rueden CT, Ackerman J, Arena ET, Eglinger J, Cimini BA, Goodman A, Carpenter AE, Eliceiri KW. Scientific Community Image Forum: A discussion forum for scientific image software. PLoS Biology 2019;
Nassar M, Doan M, Filby A, Wolkenhauer O, Fogg DK, Piasecka J, Thornton CA, Carpenter AE, Summers HD, Rees P, Hennig H. Label‐Free Identification of White Blood Cells Using Machine Learning [Internet]. Cytometry A 2019;95(8):836-842. Publisher's Version
Kulikov V, Guo SM, Stone M, Goodman A, Carpenter AE, Bathe M, Lempitsky V. DoGNet: A deep architecture for synapse detection in multiplexed fluorescence images [Internet]. PLoS Computational Biology 2019;15(5):e1007012. Publisher's Version
Rohban MH, Shafqat-Abbasi H, Singh S, Carpenter AE. Capturing single-cell heterogeneity via data fusion improves image-based profiling [Internet]. Nature Communications 2019;10(2082) Publisher's Version
Doan M, Carpenter AE. Leveraging machine vision in cell-based diagnostics to do more with less [Internet]. Nature Materials 2019;(18):414-418. Publisher's Version